CDS

Accession Number TCMCG056C25437
gbkey CDS
Protein Id XP_031402463.1
Location join(6428994..6429062,6429451..6429573,6430366..6430523,6431454..6431498,6432204..6432282,6432391..6432464,6433162..6433268,6433760..6433942,6434609..6434812,6434926..6435130,6435222..6435296,6435392..6435729,6436106..6436295,6436408..6436642,6436771..6437110,6437311..6437491,6437576..6437716,6437858..6438119,6438750..6439208,6440207..6440670,6441091..6441227,6441319..6441500,6441597..6441986,6442460..6442585,6443458..6443523,6443612..6445392,6445602..6445881,6446252..6446485,6446748..6447272,6447363..6447495,6447676..6447932)
Gene LOC116212028
GeneID 116212028
Organism Punica granatum

Protein

Length 2680aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA580467
db_source XM_031546603.1
Definition small subunit processome component 20 homolog isoform X1 [Punica granatum]

EGGNOG-MAPPER Annotation

COG_category V
Description Small subunit processome component 20 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCAACGGTTGCTCATGCTAATGCCGTCAAGTCTCTCAACAAGTCTTCTGGCCGACGGCGCTTTGTGTTCAAAACATTCTCTCAGAGATTGGAAGAGATCGAGATTGATGTTTATAAGAGTCTTGATAATGTTAAGTCGGAACCATCTGAGGGGTCATCCTTTTTCAAGGACTGCCTCATTGAATGGAGGGAATTAAATACTGCCGAGGATTTTATTTCATACTACGAGGAGATCATGCCTCTTGTTCAGACATTGCCATTGGTGCTTTTAAACAAGGAGATCCTTTTCTCAAAGCTTGTTTCGAGATTACAAATGAAGGCGAGGCTATCGCTTGAGCCCATCCTTAGGTTGATAGCCGCCTTATCTAGAGATCTTCTAGAAGATTTTGTCCCTTTTCTTCCGAGGGTTGTTGATTCATTAGTTTCTCTCCTCAAAAGTGGTGCTGACAGGGAAGCGGAGATTATTGAGCAGATTTTTTCGTCATGGTCGTACATTATGATGTATCTGCAGAAATATCTAATACGGGATATAAGGCATGTTCTCAAGGTTACCATAAAATTGAGATACTATCCCAAAGATTATGTCCAAGAGTTTATCGCTGAGGCAATGTCATTCTTGCTGAGGAATGCTCCTGTTGAACAACTTATCAAAGGTATACGAAAGATCATGCTAGAAGTCATGAAGAAGCCTTCAAGCTCTAGAAAAACCGGAGCTAGTGCCCTGTTATGTCATGCTATGAGAGGAACCTCACTAAAGTTTCATTCAAGGGCAGAAAGGGTATTGCGATTATTGATGGACAAATCAATCTTCAGTATTGGTGATAACATCAACCAAGGAGCAGATGCTATAATTGAAGTTACATCTTCTGCCTTTGAGAGACTATGTGAAGAATTGGAGCCTGGGGAGTTGAAGTTGATGAGAAACTGCTTATATGATGAAATAGATGACAGTATAGCCGACCAAAGCCTTTCGCATGCCAGTAGGCTGTTGACTTTACTGATATCTACCCTCCAGTTCAATAGTGCACATGAGGCTTTAGATTATGGCCCCTTGCTTGAACTTGTTCCGAAGATTGTTGGATCATTCGCGTCTCTCAGTTCAGAAGATGGATCCTCCAGTGTATTAGATAATGTTCTAAACTTGATGCTTAAAATTCTTTCCGGGCTGAATAATTCTGGTAATTTGCCCGCTCTAACATCCTGTCCCCAGAAATGGGCTCCTGTGTTTCAGTTGCAGAACTTGAGTTTGTTGAATTTTATTCGGGAATTGCTGTCAGAGGACGTTTACATACTGCAACTATTCAAGGTTGATATTATTAGATTGCTTGATAATTTAATCGAATCCAACACAGAGGAGGTAATTTATCTTCTGACATGCTTCTGTGAGAAAATGGAAGCAAAAATGTTGCACTTTAACCTTCTCGAAGGGATAACTGGAGGAGGAGTTTCAAGAATCCGTTTTTTAATTGGAAAGCTTATGAGCTACTGGAGTGGATTGCCATGTGACAAAAGCTCAAACATAGAAGTTGATGAGACTAAATTGGCCCTGCTTTGGGGAGCGATACGTTGCTTTCCTCATATATTTGATAATCAAGAAAGTCTCCACTCATTGATGGCTCTGATTGATGCTTTTGATCAGCTTCTAATGGCTGAGGATGATAATTTCCGAGGTTTCTCAAGGAACACCTGGCAAAGCTTGATTGGAGGTGCCTTAAATTCCTACAACAAGCTTCACTGTGGTTCTCTTGGTCTGGAAGATGCGAATAAGTTCATCCAACTAGCAAAGAGACACTACTCATGTCGGCATGTGTTGCTCGCTTCTTCTGATTGTCTGGATTCAATTTCTGGGTCCATTACACAAACGGGGATGCCTAGGGAACTTGATGAAAATGTCCTCTATGGACCCAGCAAATTTACTGAAAATTTGTGCCACTCAGACAAGGGAATTCGCATTTCAACTTTAAAAATATTGTGCCACTTCAAAATGCTTAGCGGTGAAATATCTGCAACCAATCAATCTGCCGGGATTGACATAACCAATGGAACATCAGAGACTTGCCAAGTCCTCAATCAGGGTGCTGATGTTCTTCCACTCCTCCTATCAATAGAGCAGACTCCTCTGATGATTGCAACCAGTAGAAAAGTTATCTGTTTGATCTCTAAGATACAGATGGATATATCTGCAGGAAGGATATCTGAAACATATATAACAGTGCTTCTGTATGCCATGATTGGTATATTCCAGAACCGATTTAGTTATATCTGGGACCCAGCATCCGAGTGCCTGTCTGTTCTAATTAGCAAGCATACTGGCACGTTGTGGGAGAAGTTTATTTGTTACTTTGAAGATTGCCAATCCACTTTCCTCTGTTCTCATAATCGTGAGGAGGAAGCGAATGACGAATCATCTGTGAAATCTAGTGACTTGGTGAAACATTTCAACTCGTTTGTTAATCCTGCATTGGGGAGCACACCACAAGATTCGTTGTTATCATTGTTGATCCAGTCCTTGCAAAAGATTCCAACAATCTGTGAAGCCCGATCTCGACAGCTTATCCCTCTCTTTTTGAAGTTTTTGGGTTACAACAGCGATGAACTTTCAAGTGTGGATTCTTATAACTCACGTACATGTAAGGGTAAAAGGTGGAAGGGTGTTCTTAAGGAGTGGCTGAACTTAATAAAATCCGTCCGGAACCCTAAATCCTTCTATCGGAGTCAATTCCTCAAAGACGTTCTGCAGATTAGGCTTCTTGATGAAAATGATGCTGAAATTCAGATGAAGGTTCTTGATTGTCTGCTGTTGTGGAAGGATGACTTTTTGCTGCCATATGAACAGAACTTGAAGAACTTGATCTGTTCGAAAAACTTAAGAGAGGAACTGACAACATGGAGTCTATCTTGTGAGTCCAGTCTAATTGAAGCTGGTCATAGAGCTTATATAGTTCCTCTAGCTGTGCGTATTTTGGCACCTAAAGTAAGAAAGTTGAAGACACTTGCCTCGCGAAAGCATGCCAGTGTGCATCATCGGAGGGCAGTTCTCAGTTTCTTAGCTGAACTTGACACCACCGAGCTTCCTCTCTTCTTTAAATTGTTGATAAAGCCCCTGCGAGTTATTTCACTTGAACCCAATGAGGGTAGCAATTGGTGTCAGTCCCCTGGAAGCATTTCTTTGGATGATTCTGTAACCATGGAGTTCTTGAAGTACTTCACCACGGATAATATAGTGGCTCTCTCTTGGAAGAAGATATCTGGTTTCTTGCATGTAGTTGAGGACGTCCTTGGAACCTTTGATGAGTTCCATCTTGGACCGTTCCTTAATCTGCTTATGGGAATTGTTGTCAGGATATTGGGTTGCTGCACTTTTTGTCTTGATGGAGCAAAAGGCATTTATTCATCCTCTGAGGATATGTCAGCCAGTGTTAAACAGACTATGGATGATGCTGGTGAAGCTGGAACTCATACTCTGATGAGGGCATCAGCAAAGCAGCTGAAGGATGTGAGGTCTTTCTGCCTGAAGATTGTTTATGCTGTATTGAATAAGTATGAAGATCATGATTTTGATTGTGAGTTCTGGGACTTGTTCTTCACATCGGTGAAACCACTAATCAACAACTTCAAGCAGGAGGGGTCAAGCAGTGAGAAGCCGAGTTCTCTGTTTTCTTCTTTCCTGGCAATGAGTAGAAGTCACAGACTTGTTTCTCTTCTCTATCGGGCACAGAATCTAGTCCCAGATATATTCTCGATCTTGACCGTCAGTACTGTGTCTGAAGCTGTTGTGTCTGGTGTTCTGAAATTCATTGAGAATCTCCTAAACCTTGAGAATGACTTTGGTGAAGAAGATAACAGCGTACGAAGTCTTTTGCTTTTGAACCTGGAAACGCTAATCTGTAGTCTGCATTCTCTTTTCATGGGTAATAATGTTCTCAAGAGGAAATTGATCAAACGTTCAGGGGAGACTCAAATTAAAATTTTCAAGTCATTATCAAAATTCGTGAAGGACCCGCTGCTAGCAAGGAAGTTCCTTGATATTTTATTATTATTCTTATCAAAGGAAACTCATAATTCAGATCTCTGCGTGGATGTTCTGCAAGTAGTCAGAGACATTGTACCTGTAGTACAGAGCGATACTAGCACTGAGATTCTACATGCAATTTCTCCTCTTCTAACCCATGTTGAAACGGAGAAGCGATCATCTATATGTGATCTCCTTGTTGCTCTTGCTGAGAACAACCCTTCTATGCTCAAGGCTGGGAAACTTGTGCGTGAACTAAATTCTATTTCAGCCATGGAAGCAGATCTTGATTATGATACTATTATCGGTGCTTATGAGACGATCACCACTGATTTCTTCTCTTCCGTGAGGGAGGAACATGCATTACTTGTTTTATCGCAGTGTGTGCATGATTTGTCGTCCACTGAACTGATTCTAAGAGACAGCGCATACAGATCTTTGCTTGCATTGATCGATTTCTGTGCACAAATTGTTGACCGTGAGGAGAAAGATAACCAAGAAGAGCCTGAAGCCATGGTTGTTGTTGAAAACTGTTTCTGGGACAAGTCATCTGTTCATAGGGTTGTGGAAAAGTTTCTTATGAAGCATATTGGCGAAGCAATGAAGAAGGGAGCGCCTAGCAGAAAGGAATGGATTGATTTGCTCTGGAATATGGTCGTGAAACTTCCTGAGGTGGCAAATCTGAGTTCCTTGAAGCCCTTATGCAGTGAAGATGCTGAAGTGGACTTCTTTAACAACCTAATTCACCTGCAGAAGCACAGAAGGGCTCGAGCATTATCTCGCTTTAGGAATGTTATGGGTACGAGCAACATATCTGAGGCTATCCTGGAAAGTATATTTGTCCCAATGTTCTTCAATATGTTGTTTGATGTTCAACACGGGAAATTAGAGCATATCAGAAATGCTTGCCTGGAGGCCCTCGCTTCAATTGCCGCAAAAGTGGAGTGGAAGTCATACTATGCCCTTCTCATTAGATGCTTCAGGGAGATTTCGCTTGATGCACAGAAGCAAAAGGTGGTCCTTCGGCTAATCTGCTCAATTTTGGATCAGTTTCACTTTATGAAAACATTTTCAGATCAAGGACCTGAGTTGGACCATGCTTCAGATGATCTTAACAGTGGATCTGCTTCTTATACATTGAGAAAATGCAGTTCTATTACGTTCACTGACATTCAGGCCTCCCTCCTGAAATCCGTGCTTCCCAAGTTGCAGAAGCTACTGAACTTGGACAGTGATAAGGTTAATGTGAGCATCAATCTCGCTGCGCTCAAGCTGTTGAAGCTGCTTCCTGGAGAAATAATGGAAGCACAACTTCCTAGTATTATTCACCGAGTGTCAAATTTCCTGAAGAGCCGTCTTGAGAGTATTCGTGATGAAGCAAGGTCAGCTTTAGCGGCTTGTTTGAAGGAGCTGGGTGTCGATTACTTGCATTTCATTCTCAAGGTTCTGCAAGCGACTCTTAAAAGAGGATTCGAGGTCCATGTTTTGGGGTACACATTGAACTTCATGTTGTCGAAGGTCCTTAATGACACGCGTAAGGGGAAGTTGGACTATTGTCTGGAAGACCTTCTCTCAGTAGTAGAGAATGACATCCTTGGAGATGTCTCCGAAGAAAAGGAGGTGGAGAAGATTGCCTCGAAAATGAAAGAGACAAAGAAGCGGGTTTCATACGAGACCTTAAAAATGATTGCCCAGAACATTACTTTCAAAAGCCATGCATCGAAGCTGCTCTCTCCTGTCACAGCTCACATGCAGAAGCATTTGACACCCAAAAAGAAGGTGAAGTTGGAGAACATGTTGAGCCACATTGCTGCTGGAATTGAGTGCAACCCTTCTGTTGAGCAGACTGACCTATTTGTTTTCATATACAGCCTCATAGAAGATGATTTAAATAAGGAAAAGGGTCAGACTCATGAGAAGAACATTGAGGGCAAAGAAATTCCTCCAGCCCGGGTCATTGGAGGTGACTCACCAAGTTCGCATATGATCACTTTTTTTGCACTCAGGCTGCTTCTTACACGTCTAAAGAACTTAAAGCTTGATAGAAATGATGCGTTGCTCCTGTCAATGTTGGACCCTTTCATCGTGCTCTTGTGTAAATGCTTGGGTTCAAAGTACGAGGATATATTATCCGCTTCTCTTCGATGCTTGATCCCTCTGATCAGGTTGCCGTTGCCGTCTCTCGAGCCTCAAGCTGATAAAATTAAAGCAGCACTATTAAGTATTGCCAACAGCACCGCAAACAGCGGTAATCCATTAATGGAATCTTGTTTAAGGTTGTTGACTGTCCTCCTGCAGAGTATGCACATTAGCCTCTCTTCTGAACAGTTGCATGTGCTGATTCGGTTTCCGATGTTTGTTGAGCTTGAGAGGAACTCTTCCCCAGTTGCACTCTCTCTTCTCAAGGCTATCATTCACAGAAAGTTAGTTGTTCATGAGATATATGATGTTGTGACACAAGTGGCAGAGTTGATGGTGACAAGTCAAGTTGAGTCTATCCGTAAGAAGTGCAGTCAAATTTTGCTGCAATTTTTACTTGATTATCCTCTCTCACAAAAGCGGCTGCAACAACATCTAGATTTCCTGCTGTCAAACCTGAGGTATGAGCACTCATCTGGCAGAGAGGCTGTGCTTGAGATGCTTCATGCAGTTGTGGTTAAGTTCCCCAAAAATGTTTTGGACGAGCAGGCGAAGACGATTTTTATTGATCTGGTGCTTTGCTTGGCCAATGATCATGATAATAAAGTTCGCTCCATGACAGGTGCAGTGATCAAGCTTTTAGTAGGTCGTATAAGCCAGCCTGGGCTCAATTCTATTCTTGACTACAGCTTATCCTGGTATCTGGGTGAGAAGAAGCAACTTTGGGGTGCTGCAGCACAGGTTCTAGGTTTACTGGTGGAAGTCATGAAGAAGGCCTTCCAAACTCACATCTCAAGCATCTTGCCGGCGACCAGAAGTATCTTACATTCTGCTGTTAATGCAATTGCAAATCACGAACTTGAAGTTTCTGAAAAGGCAACACCGCCTCTTTGGAAGGAGGCATATTATTCGCTGGTCATGTTGGAGAAGATTCTCCAGCAGTTTCCACATCTGAGCTTGGTTCCGGAACTTGAGGACACGTGGGAATTAATTTCAGAGCTTCTACTGCACCCCCATATGTGGGTCCGCAACATCACGAGCCGTCTGGTGGCCTTCTACTTTGCAACCATGACCGAGGCATGTACAGGGGACAACAAAAGTCTCTTACAGAACTACTTTCTCATGAGGCCGAGTAGACTCTTCTTCATCACCGTTTCCTTGTGTTGTCAACTGAAGAACCAACTCTCTGATGACTCAGCTGCAAGCGTCATCACTGAGAATCTCATATTTGCACTCTGTAGTCTGCATTCCTCAATGGGATGTATGGAACCTGAGGCTTCGCAAAAGTTTTGGTCTTCAATTGGACATGATGACCAAGTTAGATTTCTCAGAGCATTCCAGTTGGTCGACCCGGGAAAGGGAAGAGCTACGTTTCTGTATCTTAATTCGGAGATGGGCAATCACTCCAGTGAAGGCCCCTATGGGGATGTTCGATTTTTGCTAGTTCGGATTTTGTTCAAAACAATGGGGAAGATTGCCCTTCAGATGGAGCCTGTTCAGATGAAAATTGTATTTAATACTTTCCTGAAGTTCACTTCCCAAATCAGTGGTCAAGAGTCTTTGCCTTATTCGGATCAATTACTTATACCAGTCTTCAAGGTTTGCGAAGGACATTCCGGGAAGGTTATACCTGAACCCTCAAAGCAGTTCGCCCAAGAAATCTCGGAATCTCTGAGGAACGCCTTCGGAATAGAGAATTTTGTTCGGGCATATGCCCAGATAAGGAAGGACTTCAAGGACAAGAGGGACAAGAGGAAGCGGGACAAGAAGCTCCTAGCGGTCGTGGACCCTGAGAGGAATGCAAAACGGAAGCTCAGGATCGCTGCCAAGAATCGTGCCAATAAGAGACGCAAGATCATGTCCCTGAAAATGCAGAGGTGGATGCGGTAA
Protein:  
MATVAHANAVKSLNKSSGRRRFVFKTFSQRLEEIEIDVYKSLDNVKSEPSEGSSFFKDCLIEWRELNTAEDFISYYEEIMPLVQTLPLVLLNKEILFSKLVSRLQMKARLSLEPILRLIAALSRDLLEDFVPFLPRVVDSLVSLLKSGADREAEIIEQIFSSWSYIMMYLQKYLIRDIRHVLKVTIKLRYYPKDYVQEFIAEAMSFLLRNAPVEQLIKGIRKIMLEVMKKPSSSRKTGASALLCHAMRGTSLKFHSRAERVLRLLMDKSIFSIGDNINQGADAIIEVTSSAFERLCEELEPGELKLMRNCLYDEIDDSIADQSLSHASRLLTLLISTLQFNSAHEALDYGPLLELVPKIVGSFASLSSEDGSSSVLDNVLNLMLKILSGLNNSGNLPALTSCPQKWAPVFQLQNLSLLNFIRELLSEDVYILQLFKVDIIRLLDNLIESNTEEVIYLLTCFCEKMEAKMLHFNLLEGITGGGVSRIRFLIGKLMSYWSGLPCDKSSNIEVDETKLALLWGAIRCFPHIFDNQESLHSLMALIDAFDQLLMAEDDNFRGFSRNTWQSLIGGALNSYNKLHCGSLGLEDANKFIQLAKRHYSCRHVLLASSDCLDSISGSITQTGMPRELDENVLYGPSKFTENLCHSDKGIRISTLKILCHFKMLSGEISATNQSAGIDITNGTSETCQVLNQGADVLPLLLSIEQTPLMIATSRKVICLISKIQMDISAGRISETYITVLLYAMIGIFQNRFSYIWDPASECLSVLISKHTGTLWEKFICYFEDCQSTFLCSHNREEEANDESSVKSSDLVKHFNSFVNPALGSTPQDSLLSLLIQSLQKIPTICEARSRQLIPLFLKFLGYNSDELSSVDSYNSRTCKGKRWKGVLKEWLNLIKSVRNPKSFYRSQFLKDVLQIRLLDENDAEIQMKVLDCLLLWKDDFLLPYEQNLKNLICSKNLREELTTWSLSCESSLIEAGHRAYIVPLAVRILAPKVRKLKTLASRKHASVHHRRAVLSFLAELDTTELPLFFKLLIKPLRVISLEPNEGSNWCQSPGSISLDDSVTMEFLKYFTTDNIVALSWKKISGFLHVVEDVLGTFDEFHLGPFLNLLMGIVVRILGCCTFCLDGAKGIYSSSEDMSASVKQTMDDAGEAGTHTLMRASAKQLKDVRSFCLKIVYAVLNKYEDHDFDCEFWDLFFTSVKPLINNFKQEGSSSEKPSSLFSSFLAMSRSHRLVSLLYRAQNLVPDIFSILTVSTVSEAVVSGVLKFIENLLNLENDFGEEDNSVRSLLLLNLETLICSLHSLFMGNNVLKRKLIKRSGETQIKIFKSLSKFVKDPLLARKFLDILLLFLSKETHNSDLCVDVLQVVRDIVPVVQSDTSTEILHAISPLLTHVETEKRSSICDLLVALAENNPSMLKAGKLVRELNSISAMEADLDYDTIIGAYETITTDFFSSVREEHALLVLSQCVHDLSSTELILRDSAYRSLLALIDFCAQIVDREEKDNQEEPEAMVVVENCFWDKSSVHRVVEKFLMKHIGEAMKKGAPSRKEWIDLLWNMVVKLPEVANLSSLKPLCSEDAEVDFFNNLIHLQKHRRARALSRFRNVMGTSNISEAILESIFVPMFFNMLFDVQHGKLEHIRNACLEALASIAAKVEWKSYYALLIRCFREISLDAQKQKVVLRLICSILDQFHFMKTFSDQGPELDHASDDLNSGSASYTLRKCSSITFTDIQASLLKSVLPKLQKLLNLDSDKVNVSINLAALKLLKLLPGEIMEAQLPSIIHRVSNFLKSRLESIRDEARSALAACLKELGVDYLHFILKVLQATLKRGFEVHVLGYTLNFMLSKVLNDTRKGKLDYCLEDLLSVVENDILGDVSEEKEVEKIASKMKETKKRVSYETLKMIAQNITFKSHASKLLSPVTAHMQKHLTPKKKVKLENMLSHIAAGIECNPSVEQTDLFVFIYSLIEDDLNKEKGQTHEKNIEGKEIPPARVIGGDSPSSHMITFFALRLLLTRLKNLKLDRNDALLLSMLDPFIVLLCKCLGSKYEDILSASLRCLIPLIRLPLPSLEPQADKIKAALLSIANSTANSGNPLMESCLRLLTVLLQSMHISLSSEQLHVLIRFPMFVELERNSSPVALSLLKAIIHRKLVVHEIYDVVTQVAELMVTSQVESIRKKCSQILLQFLLDYPLSQKRLQQHLDFLLSNLRYEHSSGREAVLEMLHAVVVKFPKNVLDEQAKTIFIDLVLCLANDHDNKVRSMTGAVIKLLVGRISQPGLNSILDYSLSWYLGEKKQLWGAAAQVLGLLVEVMKKAFQTHISSILPATRSILHSAVNAIANHELEVSEKATPPLWKEAYYSLVMLEKILQQFPHLSLVPELEDTWELISELLLHPHMWVRNITSRLVAFYFATMTEACTGDNKSLLQNYFLMRPSRLFFITVSLCCQLKNQLSDDSAASVITENLIFALCSLHSSMGCMEPEASQKFWSSIGHDDQVRFLRAFQLVDPGKGRATFLYLNSEMGNHSSEGPYGDVRFLLVRILFKTMGKIALQMEPVQMKIVFNTFLKFTSQISGQESLPYSDQLLIPVFKVCEGHSGKVIPEPSKQFAQEISESLRNAFGIENFVRAYAQIRKDFKDKRDKRKRDKKLLAVVDPERNAKRKLRIAAKNRANKRRKIMSLKMQRWMR